Your equipment list should be totally irrelevant when choosing among the better, learning universal remotes. If the remote can't handle all of your equipment, it's not universal!!

The SL9000 and Pronto are in totally different price ranges, and have totally different levels of capabilities. (See reviews section of this site.)

My recommendations break down on price range:
1. $100 — SL9000, best by far for <= $100
2. $180-200 — Marantz RC2000 Mark II. You need this if you have trouble remembering where commands are placed, you can custom label them on the LCD panel.
3. $300+ — Pronto, if you like touchscreen, and desire total customization of button layouts and the ability to perform complex macros based on the state of your components.